This page gives an overview of the TDB architecture. Specific details refer to TDB 0.8.
Terms like “table” and “index” are used in this description. They don’t directly correspond to concepts in SQL, For example, in SQL terms, there is no triple table; that can be seen as just having indexes for the table or, alternatively, there are 3 tables, each of which has a primary key and TDB manages the relationship between them.
A dataset backed by TDB is stored in a single directory in the filing system. A dataset consists of
The node table stores the representation of RDF terms (except for inlined value - see below). It provides two mappings from Node to NodeId and from NodeId to Node. This is sometimes called a dictionary.
The Node to NodeId mapping is used during data loading and when converting constant terms in queries from their Jena Node representation to the TDB-specific internal ids.
The NodeId to Node mapping is used to turn query results expressed as TDB NodeIds into the Jena Node representation and also during query processing when filters are applied if the whole node representation is needed for testing (e.g. regex).
Node table implementations usually provide a large cache - the NodeId to Node mapping is heavily used in query processing yet the same NodeId can appear in many query results.
NodeIds are 8 byte quantities. The Node to NodeId mapping is based on hash of the Node (a 128 bit MD5 hash - the length was found not to major performance factor).
The default storage of the node table is a sequential access file for the NodeId to Node mapping and a B+Tree for the Node to NodeId mapping.
Quads are used for named graphs, triples for the default graph. Triples are held as 3-tuples of NodeIds in triple indexes - quads as 4-tuples. Otherwise they are handled in the same manner.
The triple table is 3 indexes - there is no distinguished triple table with secondary indexes. Instead, each index has all the information about a triple.
The default storage of each indexes
The prefixes table uses a node table and a index for GPU (Graph->Prefix->URI). It is usually small. It does not take part in query processing. It provides support for Jena’s PrefixMappings used mainly for presentation and for serialisation of triples in RDF/XML or Turtle.
Many of the persistent data structures in TDB use a custom implementation of threaded B+Trees. The TDB implementation only provides for fixed length key and fixed length value. There is no use of the value part in triple indexes.
The threaded nature means that long scans of indexes proceeds without needing to traverse the branches of the tree.
See the description of index caching below.
Values of certain datatypes are held as part of the NodeId in the bottom 56 bits. The top 8 bits indicates the type - external NodeId or the value space.
The value spaces handled are (TDB 0.8): xsd:decimal, xsd:integer, xsd:dateTime, xsd:date and xsd:boolean. Each has its own encoding to fit in 56 bits. If a node falls outside of the range of values that can be represented in the 56 bit encoding.
The xsd:dateTime and xsd:date ranges cover about 8000 years from year zero with a precision down to 1 millisecond. Timezone information is retained to an accuracy of 15 minutes with special timezones for Z and for no explicit timezone.
By storing the value, the exact lexical form is not recorded. The integers 01 and 1 will both be treated as the value 1.
Derived XSD datatypes are held as their base type. The exact datatype is not retained; the value of the RDF term is.
TDB runs on both 32-bit and 64-bit Java Virtual Machines. The same file formats are used on both systems and database files can be transferred between architectures (no TDB system should be running for the database at the time of copy). What differs is the file access mechanism used.
TDB is faster on a 64 bit JVM because more memory is available for file caching.
The node table caches are always in the Java heap.
The file access mechanism can be set explicitly, but this is not a good idea for production usage, only for experimentation - see the File Access mode option.
On 64-bit Java, TDB uses memory mapped files, accessed 8M segments, and the operating system handles caching between RAM and disk. The amount of RAM used for file caching increases and decreases as other application run on the machine. The fewer other programs running on the machine, the more RAM will be available for file caching. The mapped address space counts as part of the application processes memory usage but this space is not part of the Java heap.
On a 32 bit JVM, this approach does not work because Java addressing is limited to about 1.5Gbytes (the exact figure is JVM specific and includes any memory mapped file usage) and this would limit the size of TDB datasets. Instead, TDB provides an in-heap LRU cache of B+Tree blocks. Applications should set the JVM heap to 1G or above (within the JVM specific limit).
On 32-bit Java, TDB uses its own file caching to enable large databases. 32-bit Java limits the address space of the JVM to about 1.5Gbytes (the exact size is JVM-dependent), and this includes memory mapped files, even though they are not in the Java heap. The JVM heap size may need to be increased to make space for the disk caches used by TDB.